Parameter conversion programs
These programs are extraneous to Bsoft in the sense that they accommodate interchange of information with other software packages.
These programs can be compiled with a line such as:
g++ <source_code> -o <program> -I$BSOFT/include -L$BSOFT/lib -lbsoft
On Mac OS X 10.7+:
clang++ <source_code> -o <program> -I$BSOFT/include -L$BSOFT/lib -lbsoft
Single particle micrograph parameters
This program converts between X3Dpreprocess parameter files (.crd) or PFT/EM3DR DAT files (.dat), and the Bsoft STAR format. Some elements of the X3Dpreprocess files are lost during conversion because not all features are supported within the Bsoft micrograph model.
This program converts between the IMOD tomographic reconstruction parameter files and the Bsoft STAR format. The following IMOD files are converted:
- *.xf transformation matrices for all micrographs
- *.tlt tilt angle file
- *.xyz 3D marker model
In addition, the micrograph file must be given to extract some properties.