| -verbose 1 | Verbosity of output |
| -datatype u | Force writing of a new data type. |
| -sampling 1.5,1.5,1.5 | Sampling (A/pixel; default from input file; a single value can be given). |
| -origin 110,50,44 | Origin for rotations of the template (default taken from template image). |
| -angles 8.8,2.5,5.2 | Step size for alpha, theta and phi, one value sets all (default 45 degrees). |
| -shift 0.5,3,-2.3 | Shift to apply before symmetrization. |
| -symmetry C5 | Point group symmetry. |
| -Template image.map | Template with symmetry to search for. |