| -all | Reset selection to all components before other selections. |
| -closed order,3 | Select based on valency (valency,) or polygon order (order,). |
| -center | Center before all other operations. |
| -rename | Rename components based on the number of links. |
| -vertextypes 1 | Determine vertex types from adjacent polygons (1=3-digit, 2=6-digit). |
| -views | Calculate views for components. |
| -analyze | Analyze the polyhedrons. |
| -energy 112.4 | Calculate the energy components of models using the given reference angle. |
| If the angle is 0, the inner polygon angle will be used as reference. |
| -pentagon | Calculate the pentagon adjacency. |
| -sphericity | Estimate the spherical nature of the polyhedron. |
| -ellipsoidicity | Estimate the ellipsoid nature of the polyhedron. |
| -wiener | Calculate the Wiener index for each polyhedron. |
| -eigen | Do an eigenanalysis for each polyhedron. |
| -coordinates | Generate new coordinates based on spherical harmonics. |
| -dual | Calculate the dual of a polyhedron. |
| -faces 5 | Generate a dual using only the faces of the given order. |
| -find 34.7 | Find symmetry axes with an RMSD below the given value. |
| -regularize 150 | Number of iterations for regularizing a polyhedron. |
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