Bsoft program

bmodsel

Usage: bmodsel [options] in1.star [in2.star ...]

Manipulates selections from sets of components as solutions of fits.

Actions:

-allReset selection to all components before other selections.
-mergeMerge models in different files rather than concatenate.
-deleteDelete non-selected components.
-sets 20,1Generate sets of this size of selected components,
with a flag not to select across model boundaries.
-closed order,3Select models based on valency (valency,) or polygon order (order,).
-fullereneSelect fullerene type models.
-nonfullereneSelect non-fullerene type models.
-fom 0.25Select: FOM cutoff.
-fraction 0.6Select: FOM/FOMmax ratio cutoff.
-prune fomType of pruning: 1=simple(default), 2=fom, 3=large.

Parameters:

-verbose 7Verbose output.
-distance 12.8Distance criterion for pruning or overlap (default 10 angstrom).

Input:

-parameters param.starInput parameter file.
-reference file.pdbReference coordinate file to set views.
-overlap file.starDeselect components that overlap with this model (use with -distance).

Output:

-output file.starOutput model parameter file.

Bsoft version 1.5.7-20090605 (64 bit)


Generated by bdoc.pl on Mon Jun 15 11:47:11 2009


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