| -verbose 7 | Verbose output |
| -rename D | Rename molecules from the given letter. |
| -translate 0,-50,22 | Translate (angstrom) |
| -cells 2,5,3 | Number of unit cells in each lattice direction |
| -symmetry 1 | Space group |
| -unitcell | 50,50,50,90,90,90 Unit cell parameters (angstrom & degrees) |
| -parameters parm.star | Atomic properties parameter file (default atom_prop.star) |