| -rescale -0.1,5.2 | Rescale data to average and standard deviation after filtering. |
| -verbose 7 | Verbosity of output. |
| -datatype u | Force writing of a new data type. |
| -sampling 1.5,1.5,1.5 | Sampling (A/pixel; default from input file; a single value can be given). |
| -resolution 15 | Resolution limit (angstrom) |
| -Reference file.map | Reference map (required). |
| -Mask mask.tif | Mask file to exclude regions in reciprocal space. |