Bsoft objects

(constants, structures, classes and enumerated objects)

include/Bimage.h

enum FourierType Fourier transform format specifier.
enum DataType Base data type specifier.
enum CompoundType Compound data type specifier.
class Bsub_image General sub-image parameter structure.
class Bimage General image parameter structure.

include/Bmatrix.h

class Bmatrix General matrix structure.

include/Bstring.h

class Bstring Bsoft linkable string class.

include/Color.h

class RGB Class for an RGB color object.
class RGBA Class for an RGBA color object.
class CMYK Class for a CMYK color object.

include/Complex.h

class Complex Template class for complex numbers.

include/ctf.h

class CTFparam Contrast transfer function parameter class.

include/Euler.h

class Euler Euler angle parameter structure.

include/file_util.h

enum FileType File type enumeration.

include/marker.h

struct Bmarker Structure for a feature marker.

include/Matrix3.h

class Matrix3 3 x 3 rotation matrix class.

include/mg_processing.h

enum FOMType Particle figure-of-merit type.
struct Bparticle Single particle image parameter structure.
struct Bfilnode Filament node parameter structure.
struct Bfilament Filament parameter structure.
struct Bbadarea Structure to mark a bad area.
struct Bstrucfac Structure factor structure.
struct Blayerline Layer line structure.
struct Bmicrograph General micrograph parameter structure.
struct Bfield Field-of-view parameter structure.
struct Breconstruction Reconstruction parameter structure.
struct Bproject Project parameter structure.

include/mol_util.h

struct Latom A structure for use in a linked list of atoms.

include/options.h

struct Option A structure for a command line input option.

include/Quaternion.h

class Quaternion Quaternion class for orientations and rotations.

include/rwatomprop.h

struct Batomtype A structure for an atom type.

include/rwmd.h

struct Bbondtype A structure for a bond type.
struct Bangletype A structure for an angle type.
struct Bmd A structure used for molecular mechanics.

include/rwmodel.h

struct Bcomptype Model component type parameter structure.
struct Bcomponent Model component parameter structure.
struct Blink Model link parameter structure.
struct Bpolygon Model polygon parameter structure.
struct Bmodel Model parameter structure.

include/rwmodel_param.h

struct Bmodparam A structure used for model mechanics.

include/rwmolecule.h

struct Batom Atom property structure.
struct Bresidue Residue definition and property structure.
enum SecondaryType Protein secondary structure type specifier.
struct Bsecondary Protein secondary structure definition.
struct Bmolecule Molecule definition and property structure.
struct Bbond All bonds defined for a molecule group.
struct Bangle All angles defined for a molecule group.
struct Bmolgroup A collection of molecules.

include/rwresprop.h

struct Bresidue_type Residue type property structure.
struct Bresidue_matrix Residue relationship matrix.

include/rwstar.h

enum StarType Types of elements in a STAR database.
struct Bstar_item Structure for a single entry or a single column in a STAR database.
struct Bstar_block Structure for a data block with multiple items in a STAR database.
struct Bstar Overall STAR structure to hold all data blocks and options for I/O..

include/rwtree.h

struct Bnode Unrooted tree node structure.

include/simplex.h

struct Bsimplex Structure used in the downhill simplex method.

include/symmetry.h

struct Bsymop General symmetry operator.
struct Bsymmetry General symmetry structure.

include/Transform.h

class Transform Transformation parameter structure.

include/UnitCell.h

struct UnitCell Unit cell parameters.

include/utilities.h

constant M_PI Mathematical PI and variants.
constant GOLDEN Golden number: g = (sqrt(5) + 1)/2.
constant RHO Protein density.
constant VERB_ Verbosity designations - controlling output to stdout.
enum SysType System type enumeration.
constant FILL_ Fill value designations - controlling the type of filling new pixels.

include/Vector3.h

class Vector3 Vector class for 3-value vectors used in 3D space.

include/View.h

class View View/orientation parameter structure.

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